aggr

Alerts

The analysis detected 1 error.
AlertValueDetail
Low Post-Normalization Read Depth19.8%Ideal > 50%. There may be large differences in sequencing depth across the input libraries. Application performance may be affected.
44,482
Estimated Number of Cells

Aggregation

Pre-Normalization Total Number of Reads5,459,607,593
Post-Normalization Total Number of Reads3,715,526,230
Pre-Normalization Mean Reads per Cell122,737
Post-Normalization Mean Reads per Cell83,529
Fraction of Reads Kept (095)61.0%
Fraction of Reads Kept (104)19.8%
Fraction of Reads Kept (106)20.6%
Fraction of Reads Kept (114)100.0%
Fraction of Reads Kept (119)77.1%
Fraction of Reads Kept (713)52.5%
Fraction of Reads Kept (725)76.3%
Fraction of Reads Kept (740)63.3%
Pre-Normalization Total Reads per Cell (095)134,422
Pre-Normalization Total Reads per Cell (104)522,560
Pre-Normalization Total Reads per Cell (106)381,598
Pre-Normalization Total Reads per Cell (114)85,646
Pre-Normalization Total Reads per Cell (119)111,029
Pre-Normalization Total Reads per Cell (713)176,737
Pre-Normalization Total Reads per Cell (725)112,385
Pre-Normalization Total Reads per Cell (740)121,333
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (095)83,115
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (104)256,337
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (106)245,785
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (114)50,663
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (119)65,734
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (713)96,524
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (725)66,372
Pre-Normalization Confidently Mapped Barcoded Reads per Cell (740)80,075
 

t-SNE Projection Colored by Library ID

−40−2002040−40−2002040
095104106114119713725740t-SNE1t-SNE2

Cells

Estimated Number of Cells44,482
Fraction Reads in Cells92.6%
Median UMI Counts per Cell2,490
Median Genes per Cell954

Sample

Sample IDaggr
Sample Description
ChemistrySingle Cell 3' v2
TranscriptomeGRCh38
Pipeline Versioncellranger-6.1.1